Scaffold Ga0081539_10038388

Overview

Basic Information

• Taxon OID: 3300005985
• Scaffold ID: Ga0081539_10038388
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2839
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044807	Metagenome / Metatranscriptome	154	Y
F081908	Metagenome / Metatranscriptome	114	Y
F084448	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081539_100383882	F081908	GAGG	LLALLAHYGGVDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEEMK*
Ga0081539_100383883	F084448	GGAGG	MSNFADGLFPSWLSFVMLLPFLMLAFGLLFICRAFTDRGGARQEPEPEDERSRVVVPLPDRTQQPLYRVHQQIQASARPPPKSEPDEPAGTSGGRPRRRRHHGTTTRLELRR*
Ga0081539_100383885	F044807	N/A	MAVASATWGQAGFFTPFYRIAAVLDPAAYDISLEQASTGSRFWFEPQTALSGACVHLALAAFFGLLFGLLWRGDRRASPGATVLAGIAWGLVVAAVMVPVLRFCGQAVGGGGLIADAPGQMGWATYVAMHLVYGLSLGAIVALRAARPRRT*