NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081539_10038388

Scaffold Ga0081539_10038388


Overview

Basic Information
Taxon OID3300005985 Open in IMG/M
Scaffold IDGa0081539_10038388 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2839
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044807Metagenome / Metatranscriptome154Y
F081908Metagenome / Metatranscriptome114Y
F084448Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0081539_100383882F081908GAGGLLALLAHYGGVDETAIIWVPLVLIAGLWWIMRGGDPKEGDEPPPEEMK*
Ga0081539_100383883F084448GGAGGMSNFADGLFPSWLSFVMLLPFLMLAFGLLFICRAFTDRGGARQEPEPEDERSRVVVPLPDRTQQPLYRVHQQIQASARPPPKSEPDEPAGTSGGRPRRRRHHGTTTRLELRR*
Ga0081539_100383885F044807N/AMAVASATWGQAGFFTPFYRIAAVLDPAAYDISLEQASTGSRFWFEPQTALSGACVHLALAAFFGLLFGLLWRGDRRASPGATVLAGIAWGLVVAAVMVPVLRFCGQAVGGGGLIADAPGQMGWATYVAMHLVYGLSLGAIVALRAARPRRT*

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