Scaffold Ga0081538_10002892

Overview

Basic Information

• Taxon OID: 3300005981
• Scaffold ID: Ga0081538_10002892
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16389
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014615	Metagenome / Metatranscriptome	261	Y
F064871	Metagenome / Metatranscriptome	128	Y
F074517	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081538_1000289212	F074517	AGGA	VPSSSTSDRGLLARLDALVELAADRHGLALLPGGRLAAAEARVAARATGIRLPRGEGPDPAPRGAALARRDAVELLRAVAEGVGLLRVRGDRLEATSLRHAWSQIDESLRAGLVYAAWCHRVPWPVFLHGGPGVEALVGGRLWVLRLLLGLPAGVEVGLQGLVETVANGLELDLDDWLPRAVAAAFLDPLVALGVADVRPPPPHPGASLRLGPRAVTVIGSALVAAGEEVSLASTPAN*
Ga0081538_100028923	F014615	AGGAGG	VIDRKRITPWAALIGPKGDVCPEPATIGTAPRNLGRNASVVTVAFGGQGGRQAFAVGREVPT*
Ga0081538_100028925	F064871	GGAGG	MHVYMKQQLAADRIAELRADAQRARHQRARRARRAAEAGQAFARREWRVLIHALLAR*