Scaffold Ga0081529_106890

Overview

Basic Information

• Taxon OID: 3300005964
• Scaffold ID: Ga0081529_106890
• Source Dataset Name: Ferrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1374
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Echinus Geyser, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7220558
  • Long. (^o): -110.7021057

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F030159	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081529_1068901	F030159	N/A	SSMRMKALYIAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYLDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVISGYNGHNTIYRGVVAHTFGKKYARVYLNINAINAGFVNIYTRYRSRSAPDLQQMYGNSPPSNSTYQPVLEGNFGTLVYATDYSYNMPYNLGYSRTSKFRVDGQVLWVNIRQGFSPAFIELEGD*
Ga0081529_1068902	F011097	N/A	VIKIIRDVPLYTSGGTDPFTSFYSLPTGGSPITANGSNYQVLRFHPNYARLHIYITSLSGTSPSIQFTVGSYFGANYYTLPPITSPQYVYVVGNENKTIITYLNTSNAVLQQVELPYNIFFNGCYVSWSVSGTSPSISAYIHFEFEDEEESEE*
Ga0081529_1068903	F008949	AGGAGG	MSSQTVTLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPVNQTIDVKFICNKYKQVAVPRTDPLSPPVFQTVQKTI