Scaffold Ga0073922_1006177

Overview

Basic Information

• Taxon OID: 3300005955
• Scaffold ID: Ga0073922_1006177
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1373
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073922_10061772	F003299	N/A	MCQLKTMTMKIYKVVFKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLILLIEEV*
Ga0073922_10061773	F003327	N/A	MTEFTQLAREVQDAIANGEYTHQKYLRFREWYFQNYEGSKRNANRDFRMFDLMYGLDVPIKNNDNEDI*
Ga0073922_10061774	F004234	GAG	MNFINLFKRDNIYFSNWTTDYDSDVYIAGTIEPFTYDATETDDEYMSHFILNDANLNLLKSKL*