Scaffold Ga0070742_10004894

Overview

Basic Information

• Taxon OID: 3300005942
• Scaffold ID: Ga0070742_10004894
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3506
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066807	Metagenome / Metatranscriptome	126	N
F087014	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070742_100048943	F087014	N/A	MARISRKPTTRNVETAIVNHLKKKGALKGCAIVAKGDSSEAPPSLPCIIVHCPSAPRHADIIGFYARDAEVSVTLYADSEQTPEAKCETYAGNMEHCLDWVDGLKTQFNKPGGGRDYRKIRGVYLHEIIDFSTEYDTEGTNWQRTVNMTLVVQEIDE*
Ga0070742_100048946	F066807	N/A	MANYALLLGTKADKTTLIQKGQPVEIRRQFKDMTAADGFDAIEVVDKHLGQIRLRKFVKPVAKKAAKKAAKKES*