Scaffold Ga0070743_10088466

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10088466
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1044
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F007310	Metagenome	353	Y
F071169	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_100884662	F007310	N/A	MRIVSWNNTECWNNHHHYELLIKDITGFDLTQNLCSESVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQADNNGKIEVSYEKEKVCGRA*
Ga0070743_100884663	F006220	GAGG	MKKRKYVEELNLASGTEMMRASQMRPASFKDKSKYTRKTKHKKGSENE*
Ga0070743_100884664	F071169	AGG	MSNIEVQVNLDELDVVRRKLSFQCNKDFTSEETIKFLIEREFNIAKKIPLAKKSPNRAEKSDIRECIYNGSTSGEAMKKLNVSR