Scaffold Ga0070743_10021252

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10021252
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2259
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F040099	Metagenome / Metatranscriptome	162	Y
F048267	Metagenome / Metatranscriptome	148	Y
F067687	Metagenome / Metatranscriptome	125	N
F074911	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1002125211	F040099	GGA	MKPFLGEEMTYEVQTWDDADKTVYYETVKDAIDYESARDI
Ga0070743_100212523	F000919	AGTAGG	MRFRNVEFRWSKFNNKYELVKWYPQTHGETCCVVAFFDKDKEGYDMRTIGNRFFEDKDAFVVGKYAIEFLNAIFQIEQEEEELK*
Ga0070743_100212525	F067687	AGGA	MTDLSHKAQAIIDAADKVFSNGGRIRDGFASALRVLADNVAPDDYRCFYGDKEYDAGMEGRNDEIREAILSIATELEAL*
Ga0070743_100212526	F074911	GGAGG	MILDEEVIKLVEEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGMYDMSYFDG*
Ga0070743_100212528	F048267	N/A	MTDEEWETALKSMNEYAKKWVGEEIDKIKYNIIKDIINGELEAL*