Scaffold Ga0070743_10007515

Overview

Basic Information

• Taxon OID: 3300005941
• Scaffold ID: Ga0070743_10007515
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3878
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F022640	Metagenome / Metatranscriptome	213	Y
F029416	Metagenome / Metatranscriptome	188	Y
F058109	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070743_1000751511	F005089	GGA	MNTTDLLDSIKLSEQLALENYQQRNGVVDYRLPGVCHHYFAKYDLQGTRDGEICLTCKVSKTVKGSLRYTFQINGKRIAEKQIAAEFNALGAFCD*
Ga0070743_1000751514	F058109	AGCAG	MIETDFFILTGEQYQEFYTEAQQVGMNIDRYLMEFCDVEGPDVYVD*
Ga0070743_1000751516	F022640	N/A	ATLALGLRLGLSAHATVNEYQEQQADRFCQIDPNYCN*
Ga0070743_100075159	F029416	GGA	MKNTQMTNQDLSKTIYRNLFTEEQWDMIYNFVGHALDDDDFDAEDVYAIRNKIHALFN*