Scaffold Ga0073913_10000136

Overview

Basic Information

• Taxon OID: 3300005940
• Scaffold ID: Ga0073913_10000136
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13043
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (35.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005478	Metagenome / Metatranscriptome	399	Y
F005727	Metagenome / Metatranscriptome	392	Y
F021760	Metagenome / Metatranscriptome	217	Y
F027748	Metagenome / Metatranscriptome	193	Y
F036668	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073913_1000013615	F027748	N/A	MTTATRLTANQAKSAIYDLADDFSWQTVAAEMIARMSGDEARDFLEDFTRLYAD*
Ga0073913_1000013618	F005727	N/A	MRSLTRSRSADFHRQSMLKIIAAAVLLCVLWEPIRPVRNVTAQALYTAGDLIAR*
Ga0073913_1000013622	F036668	N/A	MTQTDIISVREQIQEDLICLLESQFGQVDYLSEVQDLACQIVVSNFTQLLK*
Ga0073913_1000013629	F021760	GAG	MCGPAFEYTREDFFNDASPAEWDEWEKKAAELELPLDYYLEEFV*
Ga0073913_1000013631	F005478	GAG	MYDDYDLDYTFCNDYNLDEDSYYEHSALDTDLDEDYARDGQDYESLAYRHYA*