Scaffold Ga0066795_10047437

Overview

Basic Information

• Taxon OID: 3300005938
• Scaffold ID: Ga0066795_10047437
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1266
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038113	Metagenome	166	Y
F042316	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066795_100474372	F038113	AGGAGG	MQPTKTCVYTRDEVVEFVRFKSLEKGYDPADIFRNFAAGDWRHFSQMLEAYGFCAMLPKDDPVFTE*
Ga0066795_100474373	F042316	N/A	MTPSSPSSWSSTVASLRKASDGRLAGGREALGHFERYVNLLFRLTVAHKEAAIRLSRLAASSTAWVLTGGHHPRGGGAIRLTDGRYLRLVAVLELDVSAGRQLRVQAMTWQYQNAIDDDSWVFRADYSRSRGPAASPPRGHLHIDGTLRHPDVLRPKQPLGRVHFPCRRPTLEAAVVLLADEFGVPT