Scaffold Ga0066795_10000885

Overview

Basic Information

• Taxon OID: 3300005938
• Scaffold ID: Ga0066795_10000885
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6383
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079367	Metagenome	116	Y
F085859	Metagenome	111	Y
F106196	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066795_100008852	F079367	AGG	MPINLDKVAAKIKKMLTRGDVARDAAWYKDNIAWWMGRYETLITTEADAVVRKAMAKLNQAVALRDEGINLVEQLDRDIIEAEHEVKRLGGDAFIENSEPMIKELKVYFDNLYESLKRPQSEEVEK*
Ga0066795_100008854	F106196	GGA	MTEDDKNETIKCTVSCPECGAEMTCTHEDSKHEEKHRCEKGHEWA*
Ga0066795_100008859	F085859	AGG	MKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNKLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG*