Scaffold Ga0081455_10001757

Overview

Basic Information

• Taxon OID: 3300005937
• Scaffold ID: Ga0081455_10001757
• Source Dataset Name: Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26182
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location

• Location Name: University of Puerto Rico, San Juan, Puerto Rico
• Coordinates
  • Lat. (^o): 18.402889
  • Long. (^o): -66.050054

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y
F084553	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0081455_1000175719	F084553	GGAG	LRRIYWSLGFALVALGLLFPWFDPVTTPRFNGLNFPFAHSAYSWPRHFVFFSYGTVVIIVAGLGFVAWWMRKGVAVFCTGMLLLIVGMTFFLQITSWEPTWLKMALEAGEDFQHCYHLEVAYSIPNAFVRSPARGLFEPVEAVAERFSAGMAAVGAGWICLCAGAIWICAAGLHEMKDWRRLRFVLPAFAVVIAALAVLQLWRPIAAQRLLASAEMKETRGAFADAEKDVRRAMAIDEWQRLQPACFVQLGNLYQKMQSPDRPEILFARAVLCQSRGLTEEALFHYSQAADGGDPQVRRVALLEKARLAGQYAATLYKEGGIGEACRYWLLSIEAAPDKLNGFFGAARAFQDMADYATAIKYFESVYHKTSQPCLLADIEADLGDCWYKSGHPDVARSYYMASRKMHNRANFRALKTLSESYYR*
Ga0081455_100017573	F008444	AGGAGG	MPVQHAYTMKAGTKSKLLLVYAMSADGTSGEAGVARNLSAGSAAYIREGDSAACNVPIVKGRVGEWGAGAFAEVDPDLLPGVYQFGAPDEMIAEGSARAVLLIRFPNTVIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELKAKLSAEKES*
Ga0081455_100017574	F010880	GGAG	MSYALKKGITSKILLVYALDAADMRSGKTGLSSRTPDCSAAYIREGETQVRRIPLVEGKLGQHRAGSFVEVDSKLLPGVYQFGVPDEMLAAGAETATLILKFPGAVIEPISIHLVAYDPQDADRLGMLALGPEGRRAALRGAFPRLTAKELGEA*
Ga0081455_100017575	F014022	N/A	MEVTTHVSGFSLTKLIPNDSIPCRMSEQAGNITQAAARSAQPYRRYIVGLPLQRSLFNEAARAASTIGLPALMSELDFPARLDENGDLFLDRSKVAALTKALLSWFTPATLELMDATHAAACDVLVDATENAARAATSPKGASARKLSEDLANRMALVLAYGVLSKFVPDVLLRALADAGDVEPPPFPETSAGAELMQNTFALYEACCALNYTPQRLQREWPRVLPEVFRVVAEFCKRQTGFGPLAWDSPGYENPSYVVRLLHSAFDEVNTEQVRRRLSFAKRPVVAGSISHVPERIVALRRVLGFWLDFLERETWYVRRAFYFGMIPLLKQLAAEYRREIPNVQPVDLLFLEIDELIAGTVDPAVIQTRRHRYMENSEYLSLRGIEPSHLTTMLGSL*