NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066377_10008712

Scaffold Ga0066377_10008712


Overview

Basic Information
Taxon OID3300005934 Open in IMG/M
Scaffold IDGa0066377_10008712 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2554
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051962Metagenome / Metatranscriptome143Y
F103356Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0066377_100087123F103356N/AMGRTKDLLYDGPDGFNDWKVEKGDMPPYEWFFNPDLRYDMEYEEWMNSEGYVTFVNDEIEITKPKYSDGDLIDALQYARKGIIIEPEEVGKEVYDRLFSEKVFEYLNK*
Ga0066377_100087124F051962N/AMTKKQRKEEVIKNLTNTIESESAKKGGNMELVAKLQSRLDSILDGTFVSKVKKKK*

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