Scaffold Ga0070766_10137629

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070766_10137629

Scaffold Ga0070766_10137629

Overview

Basic Information
Taxon OID	3300005921 Open in IMG/M
Scaffold ID	Ga0070766_10137629 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1483
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012367	Metagenome / Metatranscriptome	281	N
F067137	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070766_101376292	F012367	AGGAGG	MTRRELESWLLREGAIRVKRADGHKHFSLRGHHVVVLGHGPQTLSATSLSLVMKQLEQAGYRREDLRQAWAGRRS*
Ga0070766_101376293	F067137	AGGA	VPFVDGSSGLCYYRSTEGTAVVVGNWRLALLVGVVAVAMADEQYVIWRSSAVSGFDWEPTSGVYDSKEDCDQAIEARKRRIARALAFLRRIGADAAVQSAVGDRIYECRPTVTPPRSDRFKAPESP*

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