Scaffold Ga0070766_10109311

Overview

Basic Information

• Taxon OID: 3300005921
• Scaffold ID: Ga0070766_10109311
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013663	Metagenome / Metatranscriptome	269	Y
F014996	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070766_101093113	F014996	GAG	VTKVHADIEALKGFHEALVRFRHVQRGVAERSGDEIEMTRASLAAKASHWQLRLEQSQAEFDACRAGPGADCSGYAQAVEEALERLEHIRHWQQRVDEAAGEFRGTAGAFWDLLQNDLPRAESLLLALIADLQAARRVQVGAS*
Ga0070766_101093114	F013663	AGG	MHTRPDRDGQEQLRLLGAAWEEADQYWQDEVARQFDTGHWTPLVQQSGTYLEALRVLMDLLETAERDTEF*