Scaffold Ga0075116_10106118

Overview

Basic Information

• Taxon OID: 3300005918
• Scaffold ID: Ga0075116_10106118
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075116_101061182	F098516	AGGAG	MAISEATSFGALTDHFAILETVHDAGTLADIMVLVASSKVRRAQSRADAQDANEDIAASAYSGNSAEEITEVSCTYALKSGTLDISDLVIGELAVQIMAESLELTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSKIGFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRIDDAPAWELAAVLADSGDGAVFMAEVTQDPQADEGQAAWHTSSGAASFNLARLAS*