Scaffold Ga0075122_10020666

Overview

Basic Information

• Taxon OID: 3300005915
• Scaffold ID: Ga0075122_10020666
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3149
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042291	Metagenome	158	Y
F046685	Metagenome	151	Y
F064414	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075122_100206663	F042291	AGG	MTIYQAYNKRINAWVKYEFGKSGFKPLDVKQRNPKVAFKGIKKRGNKIK*
Ga0075122_100206665	F046685	N/A	MEEYYPQQISQPVSSDELAAGQFQEDKIKNIVSQLDPENQLKEIEMRIRGYKKNVFTNEWERIDPDSPEPPRLLIMRFISYLSSIMNQNTTQSNLSEGQVNAIMALVVGYVTDELDSNAALYNLENNYTERTRIGHIILNSTFFALNRALNGQEAKRMWKAMSLTESFNQNPEKSKLAEALQFWK*
Ga0075122_100206669	F064414	GAG	MAGVGDLFGSIGIGGSGGGLMSTAITMIFGSIILLGCGFGLWWFITQKKKWNIKLEIKIPRNIKAVKNKDGSIKTIGTLNKEWGKGFYDAKKGVVFIKRKGKKPVAMKPFDIKRYLSTGNILTVIQIGIEDYRPILDESYIEVVDSLTNEEGALINALIDTSESKSWRNSFEREAKMTYSIKNWIAEHGALVAMGLVLLMNLVGFAIVISRMPK*