Scaffold Ga0075117_1026628

Overview

Basic Information

• Taxon OID: 3300005914
• Scaffold ID: Ga0075117_1026628
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodobacter → unclassified Rhodobacter → Rhodobacter sp. HX-7-19 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000656	Metagenome	956	Y
F018128	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075117_10266282	F000656	GGCGG	VAISPKRNRRNTMYMPNNGFDSLAAVARLNTDNTMHHRERWPSLAWVWDELDMLRECWVTAIDPDDHEAALSEAAEQRDALSEAVRLLLEPEPDMDRVQDILMGGWW*
Ga0075117_10266283	F018128	GGGGG	VTDRDEQAARMRAMWSAVALTAINDAIRHTARESKKNKGRALKTLELWANSRDGRDVLRMAGIDPDKRVTDCMVAFTVNGVPTTRPRKNKAVL*