Scaffold Ga0075108_10021428

Overview

Basic Information

• Taxon OID: 3300005913
• Scaffold ID: Ga0075108_10021428
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2506
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006365	Metagenome / Metatranscriptome	375	Y
F015099	Metagenome / Metatranscriptome	257	N
F077787	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075108_100214282	F077787	AGGTGG	MPGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0075108_100214287	F006365	GGA	MKSIPPYVYHVWFKKSKKPTRMVAFDEEHIRDQSNGRLIKKIKKLPEEIEKIKLEPLGPKGCTVNQPADYDKGFKILKAWLDTQDGPPESVRKELRELFIDWQ*
Ga0075108_100214288	F015099	AGGAG	MKHSSKNWQVIYRCKGSLAGCFVWASSQDNAEKKFRARKEFEYDPEFDREEDGNIRSIYEYVAPQPNTSKSKMDELEAFVKFPQFYPFLKKYDAGDEKALAKQIPLTPDNIAIINGIAKVIPITRRYRGPRLRGGYMGECHRQDAERVSIYAR*