Scaffold Ga0075108_10001063

Overview

Basic Information

• Taxon OID: 3300005913
• Scaffold ID: Ga0075108_10001063
• Source Dataset Name: Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14234
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Ace Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022997	Metagenome	212	N
F046079	Metagenome / Metatranscriptome	152	Y
F091440	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075108_1000106318	F046079	N/A	MNTTFQTFIEDLHVLMRQLPHGDIEAVLWLNSLQFNCVMAAEKIQRVDLNKENFGGTD*
Ga0075108_100010632	F091440	GGAG	MSFWLPVVFICLTSGNCGFANGKLTATASECEQKNYAVRQKLATDLDVASFKLVCIEIKKDEFI*
Ga0075108_100010637	F022997	AGGA	MAKLIDFPIGLDEGETRLDLDPDAVLTGAVGMLKEVVIVGYEADGSLYFASTRANAPDVLWLLKQAEQRLLAIEREMKK*