Scaffold Ga0075132_103639

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075132_103639

Scaffold Ga0075132_103639

Overview

Basic Information
Taxon OID	3300005907 Open in IMG/M
Scaffold ID	Ga0075132_103639 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome VIRRA1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	584
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Lake
Coordinates	Lat. (^o)	-68.8136	Long. (^o)	77.9341	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F085171	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075132_1036392	F085171	GAG	MSKNKHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDELDAAVSVRVVESNQIVIEARVDLSNVELGDIDLTVD*

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