Scaffold Ga0080007_1038355

Overview

Basic Information

• Taxon OID: 3300005857
• Scaffold ID: Ga0080007_1038355
• Source Dataset Name: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22950
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (93.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Octopus Spring, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080007_103835512	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAERELKGAVVARYDEFADEWSLSRSVEDIAPNTLAEIIVQTVETLLGLQWQLEWDYDADADDMELDSGATAYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAIVDLANIIAKKLPVVRSQVSLIKGGEAIWHAE*
Ga0080007_103835516	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPTTFAQFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLQLVQQA*
Ga0080007_103835517	F069506	GGAGG	MQLEQLTYTEEQIKQAIEETWRELLQEVDAEYYSLEEYLEHYRKYWDDPDFPNDIPEIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVYYEDIVRLVTRLLNQIQSALTTE*
Ga0080007_103835518	F100012	AGGAGG	MDREKVLQALREAQAEYDIKDLDRLVREAWEEGDVLYAEIVVELIERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFFNDPVYRRRSASFRARIRSADDAVDAVMRLAELIEQNLKSRAVE*
Ga0080007_103835520	F080678	GGAGG	MFVKKVDAKTTPISEVYDDWERIWMDEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
Ga0080007_103835521	F088087	AGGTGG	MKASDGSVWLPVTVSSAPCEIYRRKSKSVVYECTEGKWVGVRVVACPEHAEKAIEKFINGGDE*
Ga0080007_103835524	F092976	GGAGG	MMQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDYDDTGVYTPSETAMAEVSAHAG*