Scaffold Ga0079992_118918

Overview

Basic Information

• Taxon OID: 3300005855
• Scaffold ID: Ga0079992_118918
• Source Dataset Name: Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPADES assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1192
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F086364	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079992_1189182	F069506	GGAGG	MQVQVPYTEEQIKQAIEAVWQELLQEADAEDYSLAEYLEHYRKYWDDPEFPNDIPEIIMRAVERIVGRPLSWYCELVRDPAGFTGEYSFVVVDPQTQKCLTHREYTSDDGRVYRFINVAGTVVYYEDIIRLVIKLLNQIQSALADA*
Ga0079992_1189183	F086364	AGGAGG	MEREIIAALETAFAEIAGAEYDDEPETFAEFLESFQKFRDPDFPVYWIPWAVEEAVEALTGRKFGWHEDVLRDEWSYSGEFSFICVDPETLRCLTAERINGNCTVSVVFPILSIDDAVQVVEYFLQLVQGGN*