Scaffold Ga0068862_100083819

Overview

Basic Information

• Taxon OID: 3300005844
• Scaffold ID: Ga0068862_100083819
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2769
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049604	Metagenome / Metatranscriptome	146	Y
F087159	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068862_1000838191	F087159	GAGG	VSRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGKVRFPFLVIANNAKPVERATASVWVAKSRTAEPFERVSARLEPIGVPGRSGPAFGGVTRIYVAHLKIPGPGRYWLVAQPVGAKIQALGALDVSARSGSVAVGAPAPR
Ga0068862_1000838194	F049604	N/A	EERGAARIVMVDLWVQALTEAADDPEIRRALRAQVHEVHFFVAEVIRGAQAAGGIVEERDADAEAWIFISLGLLSTIDRRLGNLVGDEFDDIVASRRAWMTGT*