Basic Information | |
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Taxon OID | 3300005837 Open in IMG/M |
Scaffold ID | Ga0078893_11294356 Open in IMG/M |
Source Dataset Name | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Australian Centre for Ecogenomics |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8221 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia |
Source Dataset Sampling Location | ||||||||
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Location Name | Port Hacking, Australia | |||||||
Coordinates | Lat. (o) | -34.1192 | Long. (o) | 151.2267 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008114 | Metagenome | 339 | Y |
F008731 | Metagenome / Metatranscriptome | 329 | Y |
F025259 | Metagenome / Metatranscriptome | 202 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0078893_1129435614 | F025259 | AGGAG | MIASKAIKVYASVGQPDGEYVTTVFSADDAIKVRAKLFKRTGIRRVIFKTVKEKELASYTNNEVHQL* |
Ga0078893_112943564 | F008731 | GGAG | MFVLFATKPLNDGTEGFRFNFLGVKGLTRKRQPNRKDSSRGYKIVNGDCTTQLHFGKRSIYIEHKPNRSSERKFHHFAG* |
Ga0078893_112943569 | F008114 | AGGA | MKLTINTKAFPDVPKEHLKEALGILPYWVGEYVVLGTDMDIVRFMTERYGFGSLYEFKGSVSDDGTYSYPEDPDMPYVGKMNTPNGNVYFYEYAMLALPLPDGKYFVTRMD* |
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