Scaffold Ga0078893_10776359

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10776359
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3060
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003423	Metagenome / Metatranscriptome	487	Y
F054895	Metagenome / Metatranscriptome	139	N
F077364	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_107763592	F077364	AGGAG	MAFDTLGRATNKPIDNVNIFKYRPGQIVDNDVYLEVGDFINPGQDANGNPNIAKQYQGETVKSPNPNDSGRSISEGTTIAKALYNFLPDEVIDEFAKAWVKSGDPDVAIGTTRQTKAWKDNFGKLMRDDGTLIMDEMTFLSTKASYKQTLAEVGIKDFTDFEDEFDDMATGFGTDDPVSAEEFQARIDMVYGGVKDQIPEVEKLFRERYNINLDAPTIFGALINPKIQDKVLAGEIATLQLQAEASSRGFTTTFGRFQELRNLGFTQEQAKETYRTAATSISQARGIGRDLDLKTLEDAAIGDITAQQRLQRIGAELESLQGLSLGAAKKGDEVIGLTAD*
Ga0078893_107763593	F003423	GGAGG	MEEFDAPDNGVKQMRETIDRKDDAIKKLEAELASYKDKEIDNVFGSLGLSTDKGFGKALKQVYDGPVDTESISQFAKDEYGWEPTGQVQEVTQPEPAPQVQDDARSRVAALDANSASDVPMNINDELVAALKGASVKDSLRAKLSIMENEKQNK*
Ga0078893_107763594	F054895	GGAGG	MASIGLTGDTLYSQKINNFAGELFRVGGQRTPFLSATGGLNGGKVLQ