Basic Information | |
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Taxon OID | 3300005837 Open in IMG/M |
Scaffold ID | Ga0078893_10276466 Open in IMG/M |
Source Dataset Name | Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Australian Centre for Ecogenomics |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21229 |
Total Scaffold Genes | 56 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia |
Source Dataset Sampling Location | ||||||||
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Location Name | Port Hacking, Australia | |||||||
Coordinates | Lat. (o) | -34.1192 | Long. (o) | 151.2267 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005352 | Metagenome / Metatranscriptome | 403 | Y |
F005796 | Metagenome / Metatranscriptome | 390 | Y |
F047922 | Metagenome / Metatranscriptome | 149 | Y |
F060355 | Metagenome / Metatranscriptome | 133 | Y |
F084734 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0078893_1027646612 | F005352 | AGGA | MINPATEKPYMVLVCNPYEHSTSINTRVTMEVMQKDLSRDDMIQVCEDFMKAIGYSFSSKECLDVMVTD* |
Ga0078893_1027646625 | F005796 | GGAG | MLLEIAVVIFCMIGCGMTSYHLGKQEGIETTIEHLVDQGMLNVEEE* |
Ga0078893_1027646626 | F084734 | N/A | MKKYKRKPWTDEERKTLAEYYTKLDIEDLMYLLPDRSAGAIKNQVAYLRKRGYRIK* |
Ga0078893_1027646631 | F047922 | GAGG | MTPQEIYDHKRKWLMASYFKSHTHSDIRSDVKDWLKSNCFKHRYDLKTFTDIYGDTVRFELEEDFTAFNEWYKERING* |
Ga0078893_1027646648 | F060355 | GGAG | MKLKDDIQDKWDSGWTIYDIADHYHCTVENILQILGIVENPFSYELH* |
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