Scaffold Ga0078893_10009866

Overview

Basic Information

• Taxon OID: 3300005837
• Scaffold ID: Ga0078893_10009866
• Source Dataset Name: Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19850
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F046021	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078893_1000986628	F046021	N/A	MTRKKLTPRYNDNKSIRAKIDKLLQQNTTNVANSGTGSKLDIGDDSKVKEAWERIQAKIKEIDPVFYDIIKER*
Ga0078893_1000986629	F019648	N/A	VTKKELNLLDRFASKYKIDCVPCEGKYDFWDFTYEWDDRKFYCEMKQRNFTLDFARDRYSEGILLEMHKYERILRRTKNEKGAQGLYVNFFDNDSVLIYNLNKVSIDKWFWKTMPETTDFGRRNFIYKYITFLDYDKGKVLYI*
Ga0078893_1000986630	F032280	N/A	PLYGVWTKVMADEITMKAINLLREADPSMDEVDSLDKFIAHQQEVVKMYKQFKDHPRADELKPRLTVFEESAFAFTYVYTMMKTYKREKMLANARELEMANAVIELKQELDILTKLDKGD