Scaffold Ga0074470_10714115

Overview

Basic Information

• Taxon OID: 3300005836
• Scaffold ID: Ga0074470_10714115
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13834
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.15968
  • Long. (^o): -123.80651
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034584	Metagenome	174	Y
F043603	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074470_107141156	F034584	N/A	MLRTLIRFAIILALLASGALAAPPSTCMLDGDYARALCSYQRRNFSDAGAGFGSIVDRGERDATTLRATYFLARTRMKTGHFDEASALFIRIYSMDRAFYDTWNCDFLLGECRKALGR*
Ga0074470_107141158	F043603	AGGGGG	MNNIAQTRTLRLRSGQATKIESAFSAAYVLPGMLAVNTVALLALDQLGGIPSWLKTITALFLSF*