NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078910_120063

Scaffold Ga0078910_120063


Overview

Basic Information
Taxon OID3300005835 Open in IMG/M
Scaffold IDGa0078910_120063 Open in IMG/M
Source Dataset NameBiogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1012
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location
Location NameAlnarp, Sweden
CoordinatesLat. (o)59.8152338Long. (o)17.6620518Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011593Metagenome / Metatranscriptome289Y
F078878Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0078910_1200631F078878N/AMSPNRFTPPGRPCRNRSPSRPTRARQEILSRIQEWTGVTIALEDAAYIPLRTDWMPPRDRRTADGVEVLLAGRWPAEVDAESGPRISGAVFGRIWEIVCDAAPAEENKDITTCGLSGVNEEQTENEVPEEAPVVIHIQTTPVNHVDGWSWSHIVTEIRRWADIY
Ga0078910_1200632F011593GGGGGVTSGDNLVAPEWCRGCPDPIYDDRRGEWDWYCRQHSPTGIKCTNVAVLLERCYRVREYFAKKEATL*

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