Basic Information | |
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Taxon OID | 3300005835 Open in IMG/M |
Scaffold ID | Ga0078910_114568 Open in IMG/M |
Source Dataset Name | Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Norwegian Sequencing Centre (NSC) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1274 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities |
Source Dataset Sampling Location | ||||||||
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Location Name | Alnarp, Sweden | |||||||
Coordinates | Lat. (o) | 59.8152338 | Long. (o) | 17.6620518 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F095115 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0078910_1145683 | F095115 | AGGAGG | MTRTIKKALKYAINKSENPTKMKEYIEEYFCTIGGDRRYKLKWRALSGNHKHTFSGMFDYYGKTYYFYKMNGEIELERI* |
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