Scaffold Ga0078910_102520

Overview

Basic Information

• Taxon OID: 3300005835
• Scaffold ID: Ga0078910_102520
• Source Dataset Name: Biogas reactor microbial communities from SLU, Alnarp, Sweden - PacBio 1 to 3 kb reads
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3907
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities

Source Dataset Sampling Location

• Location Name: Alnarp, Sweden
• Coordinates
  • Lat. (^o): 59.8152338
  • Long. (^o): 17.6620518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010099	Metagenome / Metatranscriptome	308	Y
F076220	Metagenome / Metatranscriptome	118	Y
F085852	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0078910_1025201	F010099	N/A	VVILYIYIPAPLFSHMTNSQTSFWTPARIAAVIGAVLLIVALAYLVSLPQNQFQPADLLEPKYAADADLGYWMVNKYDQEVDVYHLLVVMQHGNGTFEWLDGDGIWLPRRAVEGTFTVIGTFDRRKAHL*
Ga0078910_1025204	F076220	GAGG	VAELLDPIPEAAREELETYLNEDLRGAVVTVTAPIVDEDGRIYFDEIALRLEDGREVVIEAEMRGKWPMLVLEVNTGRGWRNMSVAEDYAEELEELTAAPWRPEPDTIEEARL*
Ga0078910_1025209	F085852	GGAGG	MSFTPKEVILGATLPLENGSTVTFSIAGHVEAERDYDDAVVIFGRKLLKYTNSASDADR