NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0074472_10702374

Scaffold Ga0074472_10702374


Overview

Basic Information
Taxon OID3300005833 Open in IMG/M
Scaffold IDGa0074472_10702374 Open in IMG/M
Source Dataset NameMicrobial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon Health and Science University (OHSU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11059
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location NameCathlamet Bay
CoordinatesLat. (o)46.18749Long. (o)-123.58892Alt. (m)Depth (m).02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050623Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0074472_107023747F050623GGAGMMRTSLATLAVVIAVLACGASEASAWVCRAGGVGVTTFGRSRNVIDAKLIALRRCEHRSPLPVCTILYCR*

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