Scaffold Ga0074471_10559230

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074471_10559230

Scaffold Ga0074471_10559230

Overview

Basic Information
Taxon OID	3300005831 Open in IMG/M
Scaffold ID	Ga0074471_10559230 Open in IMG/M
Source Dataset Name	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon Health and Science University (OHSU)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2075
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Astoria, Oregon, USA
Coordinates	Lat. (^o)	46.17469	Long. (^o)	-123.84933	Alt. (m)		Depth (m)	.06
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071979	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074471_105592303	F071979	N/A	MDAWDMISPFVISEFVDPFALSSVEDRWGNRKLTGVNLLKNLGKLTLNHCRNWQRDSFNYASTEDFTSKEWAQSLMMTSCDVLLVDRIDEKFDELDLYEQE*

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