Scaffold Ga0074471_10331100

Overview

Basic Information

• Taxon OID: 3300005831
• Scaffold ID: Ga0074471_10331100
• Source Dataset Name: Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Astoria, Oregon, USA
• Coordinates
  • Lat. (^o): 46.17469
  • Long. (^o): -123.84933
  • Depth (m): .06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012219	Metagenome / Metatranscriptome	282	Y
F039641	Metagenome / Metatranscriptome	163	N
F050378	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074471_103311001	F012219	AGGTGG	MNLQNFYIQKEPAPSTDWRVFGDIYDNTGNFLGTFGVDGTSVNVWWVQQDEEFQSGIVYQFATIMAQQMVSGD
Ga0074471_103311003	F050378	GAG	MSPEMWVQIGIQAFITTMSIGAAWVALQVRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAIIQRWTASVSKDSWSL*
Ga0074471_103311004	F039641	N/A	STALKNAIQAYSYADRVAIWRTVNQADGIGGVLQHWIQVAEIRGTISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYTSGNPQNLAPYYECIGSDYGHTNAVSQTIGLRARTNG