Scaffold Ga0074479_10869543

Overview

Basic Information

• Taxon OID: 3300005829
• Scaffold ID: Ga0074479_10869543
• Source Dataset Name: Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1553
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Cathlamet Bay
• Coordinates
  • Lat. (^o): 46.208333
  • Long. (^o): -123.6925
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055440	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074479_108695431	F055440	GAGG	MKLSLPLVIVLLLIPTFSARSADRPPKTNPNSVATDTLPAFNAQLLDTMSRHLNQLLGTDGSVRSMKGKTAEGNGALAFYLMFEVTGEQKFRKAALSLADQVLQDMRATKFGVLPIKKKEKPGGATIVGGGPPALGAYTSSVAYILHREGGRNDDLRYLATVLDRYPWNESGWWAATIDVKTGESKLPMTKPSPVNKTAAIAMAAGIVSAYVREIDPALSARLKHKTDKCVYDQIIPAQLADGFWHYGLNENDPKDKDVFGYFMLTTKELMNLQRFNPAYREERLNTALKRAQAFALQQIVPMTEPNTGPAPRPHATAGTPERYSVREEAKRSYQLSLILFEGGQQKEGLKIMRAALAQFPVGNAGQDGSHAAEPSALILSSPRLR*