Scaffold Ga0074479_10761419

Overview

Basic Information

• Taxon OID: 3300005829
• Scaffold ID: Ga0074479_10761419
• Source Dataset Name: Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1253
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Cathlamet Bay
• Coordinates
  • Lat. (^o): 46.208333
  • Long. (^o): -123.6925
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022276	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074479_107614192	F022276	GAGG	MGGFLALALAIGLVFGARKLCDLIRAPLWFAKFLFICSSLATTYLLAEAVVPNKPWVIWLAMLGAATGIIPVGFIVFKHIDDGRKARDSSRYHSGEKQ*