Scaffold Ga0074479_10082283

Overview

Basic Information

• Taxon OID: 3300005829
• Scaffold ID: Ga0074479_10082283
• Source Dataset Name: Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2541
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Cathlamet Bay
• Coordinates
  • Lat. (^o): 46.208333
  • Long. (^o): -123.6925
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042081	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074479_100822832	F042081	AGG	LPYSLAMELSRFCWVAWLRRANLVVAIAVALGGCFLAPWSPDRPDPAAPVAGPAPYVEDCQACHGARVGGSYAQSLHAAKGIRCGQCHTPGGHPDFAQPIRDGKCGGCHQPQYQQTLESKHFFSRQLRALDDDRAGRATLRREGFTAATPEGRRFVGDSSSGDLGGRLCVACHYDEHRLGLASVRRAEFCARCHAGREDHYPMSTPGSPNRCIECHVRAGKTVSGQVVDVHRFARPGNEGAGR*