Scaffold Ga0074475_10656247

Overview

Basic Information

• Taxon OID: 3300005828
• Scaffold ID: Ga0074475_10656247
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7779
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.30247
  • Long. (^o): -123.03645
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028780	Metagenome / Metatranscriptome	190	N
F040591	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074475_1065624717	F028780	N/A	MKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCLEINDNTEDVGKVKSYILNSIKRQVIWKNVNSFKDERILASEIAVPDQFDDEEDLNYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKGLTTARSMAQYFNIPVTSAHYLISDIKSTLKTIHHENKR*
Ga0074475_1065624718	F040591	N/A	MRIKDEYKGKTIVKNTSLGNMTVVVDNIDVKRYQYYVSIGFGYLFEKETATAPIRYEGIEADEQTEAPAPTPTPKRKRKTNAK