Basic Information | |
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Taxon OID | 3300005826 Open in IMG/M |
Scaffold ID | Ga0074477_1484037 Open in IMG/M |
Source Dataset Name | Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon Health and Science University (OHSU) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6127 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.11%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Ilwaco, Washington, USA | |||||||
Coordinates | Lat. (o) | 46.31286 | Long. (o) | -123.99663 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F008081 | Metagenome / Metatranscriptome | 339 | Y |
F014605 | Metagenome / Metatranscriptome | 261 | N |
F039629 | Metagenome / Metatranscriptome | 163 | N |
F084121 | Metagenome / Metatranscriptome | 112 | N |
F093739 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0074477_14840371 | F039629 | N/A | MIEALDEISEIPFEVFWDKFMEVCPGIYDRYTSEGYWLKMREANRILAFEYLCKFGSDQKEPWKHLQHFDLPF* |
Ga0074477_148403710 | F001775 | N/A | MNDSEKIRIATLSFLAGVILAYVLFPKRELETIYKTKVERLTDTLYITSTDTVYIPKTKIKTEVLRDTILIDFKPQISRFETLFPFEHGSTKVSGEVLGEVLKMTATSDYKLPVVTNTIIETKTETIIKKSKGFYLGPNINSALNLGASASYVDDKYLFSYQFQPVTRLHTLGVSKKLF* |
Ga0074477_148403716 | F014605 | N/A | MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFSAEEKDDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK* |
Ga0074477_14840374 | F084121 | N/A | MPRRKAKPSHSRFILKRRFINKFNEYTEWQDIGYGEFLSIEDVQEKIKLLIQNYKNKHMEVHFEMNGKLLDFNGNEISHPIKFTPK* |
Ga0074477_14840376 | F093739 | N/A | MKYSKEQIKRAVRSCVFCLGKGLNCTLEMEDHPEAGEILYNYFCGLTEPRLSELLQNPRYVLKLELIQRHLTHNYK* |
Ga0074477_14840378 | F008081 | N/A | MEESQVLNPFGHLSATKVLDENRKPSEWWIEYLEFNEILAENEFYVLFSDGLLVKKGRSKFRTSQYIKGEKFISFQKIYGGISRTSL* |
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