Scaffold Ga0074476_1737773

Overview

Basic Information

• Taxon OID: 3300005825
• Scaffold ID: Ga0074476_1737773
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 639
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.28562
  • Long. (^o): -124.05179
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005331	Metagenome / Metatranscriptome	404	Y
F062881	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074476_17377731	F005331	AGGA	MVRFSGQAPTGSRVQELEVLVRTAIFKPATALVGYLLQGAADRIDA
Ga0074476_17377732	F062881	N/A	MKTPSASDLLAQIAQIQLMERGKLSAYNFKERADRAKSYYKLQLWEKGKNETRYIRSEQVPMVQEALAGHAKFQDLVEQYAHLIIEQTREQLATVGVKKKPGPRPGSSWRRSRKSKS*