Scaffold Ga0074474_1611900

Overview

Basic Information

• Taxon OID: 3300005824
• Scaffold ID: Ga0074474_1611900
• Source Dataset Name: Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon Health and Science University (OHSU)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 618
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location

• Location Name: Ilwaco, Washington, USA
• Coordinates
  • Lat. (^o): 46.26975
  • Long. (^o): -123.94603
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024483	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074474_16119001	F024483	N/A	KKGIFLGYRTNTLKNVVWYDPLTDRVKYGYHVRFNKGFNDLPLSKLPPNVVLMDRREERVPAETLTITIPPFTTSEHPFFHEDDVTVKVVCNSDLYGFELREDDCMKRVYISDFKKDGKGMKSRRSCNTICSTERATRRKYRGAYITAIDDEEIVTLNQAKEKLKELRNKNVDTFTMILAREPRPSKSMTRRAYPRTMRRRRGGI