Scaffold Ga0078745_1119900

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0078745_1119900

Scaffold Ga0078745_1119900

Overview

Basic Information
Taxon OID	3300005823 Open in IMG/M
Scaffold ID	Ga0078745_1119900 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, MM2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aarhus University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	743
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location Name	Aarhus Bay station M5
Coordinates	Lat. (^o)	56.10555	Long. (^o)	10.463333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025174	Metagenome / Metatranscriptome	203	N
F031468	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078745_11199001	F025174	AGGAG	MSNFTDPMAALEEAEYLAKEEKRTMCVVEVEPNMIVVVPKAEALGMGKIILETCVPFEENFNIYD*
Ga0078745_11199002	F031468	GAG	MKITIEVDGADAEELIALIQRVTDAVEKLEDILKEFEDE*

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