Scaffold Ga0079957_1075283

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1075283
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1931
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F033034	Metagenome / Metatranscriptome	178	Y
F045702	Metagenome	152	N
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10752833	F006546	N/A	MKWKYIGNRAGDATKGEQYIVEADELTEIYMKEVPYPQFVKVYVVQPPSPRKNFMTMKVGDIVKICNPYYEMAYHSHPGFVPVKE*
Ga0079957_10752834	F089938	N/A	MLNIDQAFTVQEFVRVNRTRRVWEIQDELYHLICILTKTEQEKKDETETTAA*
Ga0079957_10752835	F033034	N/A	MKVVKLTKKAQDIVNQIMSADAVDIDHGPVGERIAYGNSFLSGEGLEFNVNVDGEIGEMVITNETLNEATIVNGVIQIDADHIKDNPYGDMTITLYKLSKLNAV*
Ga0079957_10752836	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGANNNTYCAQISSATDKNVRFYDVNADANRVVPTASVVYARSGKVQFRKPRK*