Scaffold Ga0079957_1050835

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1050835
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2543
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F004837	Metagenome / Metatranscriptome	421	Y
F012449	Metagenome / Metatranscriptome	280	Y
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10508352	F004837	N/A	MTQDEFLLAAKHRHYWEQYQASLFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVTSALSYIYQQADQFAQDNQHTVTHALTNPSKQ*
Ga0079957_10508353	F012449	N/A	MELILPLLVSSLAALAIAEYHVLPAWWYRTWFAKHKPFSCVTCLSFWLGFMFGITVFDFNVVVILAAILYGLASAGLTVVILQLTNR*
Ga0079957_10508354	F001345	N/A	MASAEQIILDLHRSGEIRKACLTITGGDPLWRDLEQECVLILLEKDPDKILQIHSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDSNEEIDPNADMTHEEYSSLVDDMWAIAEAEMDSWAKEGAFPYDKELLKLHMATGNMKKLSRETGIPYRSVIYSIEQAKAKIKAAILLNHGTDTPATR*
Ga0079957_10508357	F046337	N/A	MEWTRLTPETMPSKMEEVFIALHDGNYAVAWLVGTQTQTFTNIHRDVWWVHEVSHWMYPTPPKL*