Scaffold Ga0079957_1049175

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1049175
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2597
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F010915	Metagenome / Metatranscriptome	297	Y
F037694	Metagenome / Metatranscriptome	167	N
F045702	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10491752	F009402	N/A	MKKLDKEFESASFKYKQIHRENMYAIYERKHIDTNKDPHYEAIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCTSRKAAYERLDKMMKEDVINKEAANKKAERKNNK*
Ga0079957_10491753	F006546	N/A	MKWKYIGNRTGDATKGEQYIVEADELTEIYMKTQPYPQEVKVYVIQPPNLRKNYSMMRAGDIIKICNPYYEMANYSHPGFIPVKE*
Ga0079957_10491754	F037694	N/A	MLNKEQAFLVNEFIRKHATRNLWEVSDKLYTLLSEIKKIEELPQKNETEIAAA*
Ga0079957_10491755	F010915	N/A	MIVVVQVGLDLYNLSYVKYVDHDVVQYVKHNLNAEDVAQFLGNN*
Ga0079957_10491756	F045702	N/A	MTITQTLNRTAGRFTTLVVNKGATDNTFCAQITSATDKNVRFYDVNADANRVVPTASVVYARSGKVQYRKPRK*