NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079957_1039750

Scaffold Ga0079957_1039750


Overview

Basic Information
Taxon OID3300005805 Open in IMG/M
Scaffold IDGa0079957_1039750 Open in IMG/M
Source Dataset NameMicrobial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2999
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location NameWichita, Kansas, USA
CoordinatesLat. (o)37.7330997Long. (o)-97.7990663Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044453Metagenome / Metatranscriptome154Y
F055683Metagenome / Metatranscriptome138N
F064669Metagenome / Metatranscriptome128N
F099193Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0079957_10397504F055683AGGAGMAQLNTTEDILQYAKAQPGITQQESVGGSLYCELIDADQAEWFRKDLQEKVTEHTEVKMYRLGTGVNRNRVEYVYDFVPKTQEIPQEVEQMIELEAEIARGK*
Ga0079957_10397505F064669AGGAGMANITRAQHPVEQWVQHITKTQPDLILGTLQHADLARAQQLALEMQQRGLSTQDLQRLKNRKHPTMLFV*
Ga0079957_10397506F099193AGGAGMYIMMDQSRLKREFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLWDWDPDKKQCTLQLRWGDDQNNLENYCHYEDLDEQEYLRQYDEYVMSVKLTDFVS*
Ga0079957_10397508F044453AGAAGMHIDMNAIFITDSKGEALTRQAVIDRLCQYDVYLIMKNIELEDYDWLSDTRERGFKGYQNYTDDELKDEWLESEAGWSNMIEDGEQLYNIVNTRETA*
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