Scaffold Ga0079957_1025934

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1025934
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3970
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F017827	Metagenome / Metatranscriptome	238	Y
F021984	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102593410	F017827	N/A	MSYASVNYESFGNIKNIPANRARVVKAGTPVVTYTTMFGRKYFLPYRTKKQYAEIAAFIKLFRQEDITLKRILSDYSVKMGQYVNEPKLRKELREAFGFSKSAIDMILSIH*
Ga0079957_10259346	F021984	N/A	MNSIPRGYTITPKVKFLRTKEGKKRTQLVELTHKRKGIKKLFGNEDYAIKFILKLESEKVQTQALAGKGAPTLGKSAIISAGKDLIAAKELAGNFEHITNETE*
Ga0079957_10259349	F009073	N/A	MKNYQIILTAIVSFFVAFTILNGTAAEYVHFAGPLNELGCAVIALTMGTLCIFGLDWKSLINYLKK*