Scaffold Ga0079957_1025781

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1025781
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005092	Metagenome / Metatranscriptome	412	Y
F007363	Metagenome / Metatranscriptome	352	Y
F013526	Metagenome / Metatranscriptome	270	Y
F014129	Metagenome / Metatranscriptome	265	Y
F026861	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_102578110	F026861	AGGA	MKLDEFRAYIEAQRKAQQLTNLEKIAKIVSTTNTKKGNN*
Ga0079957_102578113	F013526	AGGA	MKKNVLISFVTDANTDLDAIFALNKVMYKLPESDVVKFDAFEILDVVE*
Ga0079957_102578115	F014129	N/A	MSDPPARILVLDKKERWSKMTTLEIREITLSNVSADEANLIVCSFCDNYASETFCGKCGEYKGLMTLGEWLAYTNESWVL*
Ga0079957_10257813	F005092	AGGA	MDKLEYALRTIENCDLCNGIGAQYWANGEDYDFEDCVCNPYGLILDDGEVIWDNGLLSEPELSLFTTTEAN*
Ga0079957_10257815	F007363	AGGA	MRHYSIVDLLVDTYYAPTSLRRRFNGGIINFAEKREDTYPPEGWEHFSVRYRPTGSLRDEWATVAVRVSDY*