Scaffold Ga0079957_1019780

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1019780
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4739
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020680	Metagenome / Metatranscriptome	222	Y
F023832	Metagenome / Metatranscriptome	208	Y
F032635	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_101978010	F020680	GAGG	MTTVNLALASVSDIKALVSTGTVKHDDAMSRVDSVLSRKVLTDGKKARWTRLREWLVKEQAEYIRISNA*
Ga0079957_10197806	F032635	GAGG	LTSRDWRCVTKDCHYYYQVDDGKVIGQAYNLAHTIVWGAKIPVNAAEELILGQYIEMEFAKRAIEEYWAKRDRTLEAVHEYLLPTHGS*
Ga0079957_10197808	F023832	GGAG	MVNPTRKMIEVYEMLKDGKPFKFETLVSRLGCKPVTAMVLICALKRDCGADIETIRDGRKVESYQLHNAEAIASKMVGKAKATKTKAPKVAKVAVLKTKAVVSKSKVAVANDAVPTLDVEEIDSDAELASLKAELGLSDSYSE*